The solution would be to fix ply to the wood floor and screw down every 300mm, be carefull of pipes. Use a leveling compound or PTB (pourable thick bed adhesive) on the concrete to level, up to the ply. Your set out will be dictated by the movement joint between the two surfaces, you will have to set your tiles out either side of the joint so as a tile is on each surface leaving a 6 mm expansion joint in between, fill this with Silicon the same colour as the grout and use 5 mm spacers over the rest of the floor so as not to make the Silicon stand out.
From North East Tiling Training Gaffa.